Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2561653	2561655	3	61 [0]	[0] 34	lldR	DNA‑binding transcriptional repressor

ACGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGT  >  minE/2561591‑2561652                                                              | tcggcggCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:97022/61‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:3262838/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1034673/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2645433/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2695766/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2751991/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2759293/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2805008/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:286323/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2953651/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:298942/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:3038349/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:3042114/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:310089/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:3122282/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:3152442/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2608294/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:437823/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:453714/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:465860/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:608325/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:645071/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:719278/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:721043/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:828211/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:883697/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:907474/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:963484/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:977128/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2457774/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1113415/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1151129/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1165247/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1176927/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1467148/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1514223/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1543429/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1683237/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1755042/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1782992/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1784021/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1789281/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1790111/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2015618/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2074229/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2112075/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2198341/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2473122/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2431702/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2217443/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:222395/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1840591/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2279514/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2326177/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2380136/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2405993/62‑1 (MQ=255) aCGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:2420196/62‑1 (MQ=255)  cggcggCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:646765/61‑1 (MQ=255)  cggcggCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:592207/61‑1 (MQ=255)                    cgcTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:597703/43‑1 (MQ=255)                      cTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGt  <  1:1071910/41‑1 (MQ=255)                                                              | ACGGCGGCAGAATGCGTTGCGCTGCGGCGCGATAATCGCTGGCTGCGGAAATAATCATGCGT  >  minE/2561591‑2561652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑