Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2785912	2785915	4	62 [0]	[0] 12	yjbC	23S rRNA pseudouridine synthase

TGTTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGC  >  minE/2785850‑2785911                                                              | tgtTCCCGATTGGCCGCCTTGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2808209/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATTAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1497117/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:3039663/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1024362/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2409706/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2528655/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2562511/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:256967/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2692747/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2711900/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2718204/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2729925/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2816868/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2879783/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2926651/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2988463/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2365048/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:3153505/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:3284992/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:379871/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:396282/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:455705/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:484248/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:744202/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:745093/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:790237/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:821347/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:864985/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:890142/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:944742/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2290189/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1347580/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1453396/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1548181/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:154911/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1579458/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1623154/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1683700/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1709264/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1827073/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1828203/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1829430/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1861503/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1888507/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1929678/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:18709/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:199256/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2002647/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2036116/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2042589/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2059786/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2296725/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:225987/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2071494/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:2224182/62‑1 (MQ=255) tgtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGAGGCTGATTTTCCTCACCAATCACGGc  <  1:1096479/62‑1 (MQ=255) tgtTCCCGAATGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1320835/62‑1 (MQ=255)  gtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1548319/61‑1 (MQ=255)  gtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:1946349/61‑1 (MQ=255)  gtTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGCCTGATTTTCCTCACCAATCACGGc  <  1:721018/61‑1 (MQ=255)          ttGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:64908/53‑1 (MQ=255)             gccgccTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGc  <  1:856253/50‑1 (MQ=255)                                                              | TGTTCCCGATTGGCCGCCTGGATAAAGACTCCCAGGGGCTGATTTTCCTCACCAATCACGGC  >  minE/2785850‑2785911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑