Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	10265	10284	20	84 [0]	[0] 41	yaaH	conserved inner membrane protein associated with acetate transport

ACCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTC  >  minE/10228‑10264                                     | aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:3014514/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:444405/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:3288739/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:3263641/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:3249759/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:3218325/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:3160395/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:314746/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:3110511/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:3074318/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:3063140/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:446784/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:3013115/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2903476/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2896973/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2871292/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:282657/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2815154/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2805355/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2777062/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:102398/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:694628/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:987679/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:980546/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:973327/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:896000/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:857603/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:849925/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:816166/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:743260/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:723707/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2714340/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:678638/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:653826/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:621983/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:61392/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:612440/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:54309/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:541625/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:513542/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:480817/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1423427/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1814614/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1804851/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1768104/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1735098/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1728041/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1718571/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1693446/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1527942/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1503661/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:143375/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1867262/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1419758/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:139418/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1315576/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1289423/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1249022/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1245903/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1194629/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1128484/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1128483/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2426523/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:26951/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2620404/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2619613/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2571815/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2561148/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2553427/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2499635/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2459384/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2714016/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2338580/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2298384/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2244580/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2204358/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2200373/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2154933/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2075361/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2069522/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2038191/37‑1 (MQ=255) aCCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTc  <  1:1879271/37‑1 (MQ=255) aCCCAGTTTAGGCATCAGCAGAATCGCAACCAGCGTc  <  1:959266/37‑1 (MQ=255)  cccAGTTTGGGCATCAGCAGAATCGCAACCAGCGTc  <  1:2882924/36‑1 (MQ=255)                                     | ACCCAGTTTCGGCATCAGCAGAATCGCAACCAGCGTC  >  minE/10228‑10264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑