Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	540126	540138	13	5 [0]	[0] 5	[rhtA]	[rhtA]

GGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGTTATGCATAACCATGCAGAAATGTAAA  >  minE/540064‑540125                                                              | ggTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGTTATGCATAACCATGCAGAAATGTaaa  >  1:1049936/1‑62 (MQ=255) ggTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGTTATGCATAACCATGCAGAAATGTaaa  >  1:1305117/1‑62 (MQ=255) ggTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGTTATGCATAACCATGCAGAAATGTaaa  >  1:2228351/1‑62 (MQ=255) ggTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGTTATGCATAACCATGCAGAAATGTaaa  >  1:357181/1‑62 (MQ=255) ggTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGTTATGCATAACCATGCAGAAATGTaaa  >  1:52264/1‑62 (MQ=255)                                                              | GGTGTAGAGGAAAAGTAGCGAGAAATTCTGCATGGTTATGCATAACCATGCAGAAATGTAAA  >  minE/540064‑540125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑