Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	541051	541080	30	22 [0]	[0] 36	rhtA/ompX	threonine and homoserine efflux system/outer membrane protein

GGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCG  >  minE/540989‑541050                                                              | ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:1462470/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:863503/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:3197662/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:3077075/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:3060110/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:3053683/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:3017203/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:3002728/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:2806177/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:2791138/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:2420115/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:2386404/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:2066612/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:1914296/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:1734211/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:1617978/62‑1 (MQ=255) ggCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:1331393/62‑1 (MQ=255)  gCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:3075626/61‑1 (MQ=255)  gCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:3204250/61‑1 (MQ=255)  gCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:403346/61‑1 (MQ=255)  gCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:817655/61‑1 (MQ=255)  gCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCg  <  1:916124/61‑1 (MQ=255)                                                              | GGCATTTTACGTAATGAACCAGGCATCCTTTCTCCCACAAATATCTAGACTTAAGTAAAGCG  >  minE/540989‑541050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑