Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1270625	1270648	24	44 [0]	[0] 49	yedQ	predicted diguanylate cyclase

TAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACG  >  minE/1270563‑1270624                                                              | tatgCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2459497/59‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:317751/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1046550/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2520136/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2551590/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2575629/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2595938/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2938236/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2955249/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:3002616/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2448299/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:3193767/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:3195856/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:441721/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:542602/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:568300/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:640882/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:713745/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:806646/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:842254/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1473004/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1050456/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:122769/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1234008/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1259590/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1337631/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1341469/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1343721/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1442826/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1513785/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1859517/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1887829/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1930839/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1992610/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2076201/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2102610/62‑1 (MQ=255) tAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2124610/62‑1 (MQ=255)  aaGCGTTATCGCTCGCGAATACCGGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2675881/61‑1 (MQ=255)  aaGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2289994/61‑1 (MQ=255)  aaGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:1310263/61‑1 (MQ=255)  aaGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2165816/61‑1 (MQ=255)  aaGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:2413259/61‑1 (MQ=255)     cGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:777636/58‑1 (MQ=255)          tcgctcgcGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACg  <  1:500812/53‑1 (MQ=255)                                                              | TAAGCGTTATCGCTCGCGAATACCCGATTACGCCCAGCCTGTTTAGCGAGATAAAGCCGACG  >  minE/1270563‑1270624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑