Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1528964	1528997	34	44 [0]	[0] 6	trmC	fused 5‑methylaminomethyl‑2‑thiouridine forming enzyme methyltransferase and FAD‑dependent demodification enzyme

TCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTAA  >  minE/1528902‑1528963                                                              | tCTGGCGGCGCAGATGTGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:551442/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:392838/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:1079367/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2869422/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:289049/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2949116/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:300000/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:3000345/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:3015744/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:3050052/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:3099957/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:381331/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2762103/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:493505/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:542933/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:69882/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:738044/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:787688/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:857272/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:857320/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:876345/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:973253/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2032403/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:1086851/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:1100098/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:1355327/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:1449411/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:146873/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:1469019/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:1789759/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:1954760/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:19876/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2708936/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2042973/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:210140/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:222321/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2416691/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2467255/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2475102/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2490366/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2499546/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2588484/1‑62 (MQ=255) tCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:2629788/1‑62 (MQ=255) tCTGGCGGAGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTaa  >  1:778120/1‑62 (MQ=255)                                                              | TCTGGCGGCGCAGATGAGCGACGAACCGATTCCGATGGATGCCAGTACGCTGGCGGCGTTAA  >  minE/1528902‑1528963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑