Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1540653	1540655	3	67 [0]	[0] 49	yfcV	predicted fimbrial‑like adhesin protein

CTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAC  >  minE/1540591‑1540652                                                              | gtATTTGCAGAAGAAACTGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2082672/61‑1 (MQ=255) cTATTTGCTGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:3293562/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2831483/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:3274825/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:3274483/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:3269373/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:3120925/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2912678/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2874115/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1011212/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2767543/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:276675/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2756627/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2713062/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2686135/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2620357/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2473626/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:329289/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:338445/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:541136/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:545929/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:553422/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:639724/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:677072/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:69370/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:706249/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:726511/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:755828/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:75931/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:800567/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:818296/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:887484/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:929989/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1823658/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1170452/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1240722/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1277093/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1293024/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1317516/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1502987/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1505357/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1588628/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1165076/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1672326/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1675137/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1679921/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1704051/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2468705/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:177918/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1840573/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1870373/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1895214/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2082236/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2097800/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:211713/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2143610/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:219359/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2201813/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2386701/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2448899/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2456357/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2461383/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:1028822/62‑1 (MQ=255) cTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTATTTCCTGAGTATCAAATAc  <  1:1722390/62‑1 (MQ=255)  tATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:673835/61‑1 (MQ=255)  tATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:2499973/61‑1 (MQ=255)                         gTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAc  <  1:844273/38‑1 (MQ=255)                                                              | CTATTTGCAGAAGAAACGGTACCAGTAAAGGTAGTGGTCATTGTTTCCTGAGTATCAAATAC  >  minE/1540591‑1540652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑