Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1700833	1700986	154	37 [0]	[0] 12	hcaR	DNA‑binding transcriptional regulator

ATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTCC  >  minE/1700777‑1700832                                                        | aTCAGTAAAGCAATGGAAGGCACATTTGCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2243198/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACTACCTGTcc  >  1:2239706/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:421359/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2844121/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2859974/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:294189/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:294605/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:3022004/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:352223/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:412296/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2553726/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:540095/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:547052/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:555317/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:600898/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:615119/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:698300/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:733946/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:905925/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:94691/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:105067/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:1207933/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:1216376/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:1239817/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:1244845/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:131083/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:1606458/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:1872488/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:1913821/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2151135/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2275493/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2358745/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2391208/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2505241/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2536869/1‑56 (MQ=255) aTCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTcc  >  1:2626552/1‑56 (MQ=255) aTCAGAAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGAcc  >  1:1124047/1‑56 (MQ=255)                                                        | ATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTCC  >  minE/1700777‑1700832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑