Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1938983	1938986	4	58 [1]	[1] 39	xerD	site‑specific tyrosine recombinase

GACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAACT  >  minE/1938921‑1938983                                                              |  gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:3194285/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1014047/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2475902/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2485396/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2529604/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2565190/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2590243/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2640337/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:264892/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2662521/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2784349/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2789132/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2837253/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2990463/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:3191862/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2421215/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:3207607/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:3217064/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:324011/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:3253616/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:3257322/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:3275900/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:340645/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:572264/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:780684/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:787433/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:872549/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:96908/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:99326/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1738361/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1031239/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1038235/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1143754/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1199805/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1306423/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1375448/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1379371/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:139291/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1402155/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1443356/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1496660/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1506809/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1539455/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1711343/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2369011/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1764401/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:176504/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1806783/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1837059/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:186262/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1882232/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1904845/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2164096/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2301799/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:2318035/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTTCAGCCAGA‑TTTTTTCCAGCCACAGAGCATCAAGAAACt  >  1:2298321/1‑62 (MQ=255) gACGGTAAGCGTTCAACGTATTTGCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:3008624/1‑62 (MQ=255) gACGGTAAGAGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAAc   >  1:1761071/1‑62 (MQ=255)                                                              |  GACGGTAAGCGTTCAACGTATTTTCAGCCAGATTTTTTTCCAGCCACAGAGCATCAAGAAACT  >  minE/1938921‑1938983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑