Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2171019	2171019	1	21 [0]	[0] 41	rpoN	RNA polymerase, sigma 54 (sigma N) factor

CCAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTGG  >  minE/2171020‑2171079 |                                                            ccAGTCACGTCAATACCGTGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1471028/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:3186774/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2463669/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2489971/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2499021/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2624924/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2638170/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2887959/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2955727/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2955870/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:3130383/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:3175119/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2281827/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:3213475/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:380459/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:633030/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:682991/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:695097/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:835670/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:946876/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:950863/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1593291/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1085846/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1100942/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1107791/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1202415/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:122589/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:129311/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1498195/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1547038/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1072656/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1635804/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1702869/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1836410/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1851600/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:188234/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:1997497/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2061994/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2165751/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:2277799/60‑1 (MQ=255) ccAGTCACGTCAATACCGAGGGCGGCGGAGAAGCTTCCTCCACGGCGATTCGTGCGCTgg  <  1:745906/60‑1 (MQ=255) |                                                            CCAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTGG  >  minE/2171020‑2171079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑