Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2313059	2313064	6	29 [1]	[0] 92	[rraA]	[rraA]

AAAGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAC  >  minE/2313065‑2313126 |                                                              aaaGGCACCTCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2337905/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCTTACACAGTAAAGAAATTAc  <  1:1415508/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAAtt    >  1:1134702/1‑60 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:2314226/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:701943/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:1521465/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:697572/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:1554689/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:162693/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:2961346/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:2406439/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:1509446/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:302328/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:313263/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:3129913/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:2302776/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:2150903/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:3084046/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:305931/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:786900/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:2747738/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:2730446/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:921562/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:89471/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:1143654/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:887670/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:880333/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:1260428/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:2463663/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:1357249/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:807648/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:2457913/61‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:3003480/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:3008330/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2888591/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:275957/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:2933211/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2758973/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:446362/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:3103177/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:3226862/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:324758/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:3265278/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:3276785/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:365885/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2417711/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:449477/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:678552/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:787139/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:868183/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:869370/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:880391/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:917380/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:948136/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:979361/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1329967/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2725627/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1667038/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1548761/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:1545039/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1511877/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1409490/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1405844/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:1398201/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1709638/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:1317939/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1184483/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:117790/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1168997/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:1134705/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1062453/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1056191/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1033850/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:2237654/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2685203/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2669817/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2433919/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1023772/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2358721/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2304079/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  >  1:2270995/1‑62 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1710229/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2131630/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:2049559/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:20196/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1959386/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1911089/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:1833081/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAc  <  1:173063/62‑1 (MQ=255) aaaGGCACCGCAAGGTGCC‑TTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:2381590/60‑1 (MQ=255) aaaGGCACCGCAAGGTGCATTTTTTCTTCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:863398/61‑1 (MQ=255) aaaGCCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTa   <  1:1044879/61‑1 (MQ=255) |                                                              AAAGGCACCGCAAGGTGCCTTTTTTCTGCGTTACCTGTTGGCCTACACAGTAAAGAAATTAC  >  minE/2313065‑2313126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑