Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2390290	2390337	48	4 [0]	[0] 68	rhtC	threonine efflux system

CAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCA  >  minE/2390338‑2390398 |                                                             cAGGGCAAACAGGCTGGCAACGCCGGTAAACCACGCCAGCGTTTCCACAATGATCAGCGCa  >  1:608002/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCCCGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2945193/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAgcgc   >  1:2642660/1‑60 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2954443/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:303738/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2817946/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:277120/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2761644/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2754529/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2710120/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2692586/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2655887/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2583811/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2528695/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2526347/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:249924/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2455040/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2441545/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2403229/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:3183872/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:3236583/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:336792/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:376648/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:560124/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:571343/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:578209/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:614493/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:726392/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:742380/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:783850/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:840089/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:904610/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:928441/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:987836/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1363121/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1708501/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1621698/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1594154/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1563162/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1547166/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1508553/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1486750/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1443995/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1786371/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1304240/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1283045/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1281505/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1268893/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1075933/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1072088/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1056918/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2286067/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:236104/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2342067/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2337631/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2334245/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:231642/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2312192/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:230011/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1009999/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2136454/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2086977/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2086594/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2012360/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1976881/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:197416/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:1786451/1‑61 (MQ=255) cAGGGCAAACAGGCTGGCAACGACGGAAAACCACGCCAGCGTTTCGACAATGATCAGCGCa  >  1:2287378/1‑61 (MQ=255) |                                                             CAGGGCAAACAGGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCA  >  minE/2390338‑2390398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑