Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2540274	2540288	15	4 [0]	[0] 15	rfaJ	UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase

TGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCC  >  minE/2540289‑2540350 |                                                              tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:1226035/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:1662997/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:1795302/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:1989227/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:2064139/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:2069018/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:2090618/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:2228438/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:2445039/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:2491613/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:537623/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:568286/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:763284/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTcccc  >  1:890987/1‑62 (MQ=255) tGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTc     >  1:1243846/1‑59 (MQ=255) |                                                              TGGCACAAATGGGCAATTTATCCATCGGTAAAATACTATAAAATAGCTTTAGAAAATTCCCC  >  minE/2540289‑2540350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑