Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2661792	2661797	6	35 [0]	[0] 50	rtcR	sigma 54‑dependent transcriptional regulator of rtcBA expression

CGAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGAAA  >  minE/2661798‑2661859 |                                                              cgAAATTTGCGTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCTGGCGATAAGCTGaaa  >  1:456683/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCgcgc                         >  1:2999127/1‑39 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:2351229/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:1182497/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:2524306/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:2622715/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:3007391/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:3195940/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:3226718/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:429623/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:460841/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:600555/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:724449/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:747345/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:810826/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:863569/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:99784/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:1228495/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:1230064/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:2251289/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:1906140/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:1699039/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:1466186/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:1365201/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaaa  >  1:1892881/1‑62 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGaa   >  1:3065097/1‑61 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:503665/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:367900/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:1504599/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:489286/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:3215933/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:1358117/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:650121/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:1310784/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:1255119/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:1137675/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:3246488/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:1579767/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:316531/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:3124129/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:3111228/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:1897607/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:2929606/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:2909242/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:258104/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:2080633/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:2446623/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:2382947/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGa    <  1:2109983/60‑1 (MQ=255) cgAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCAACGTTCCGGCGATAAGCTGaaa  >  1:864742/1‑62 (MQ=255) |                                                              CGAAATTTGCCTTCGGCAACCAGCTGGCGCAAATCGCGCACCGTTCCGGCGATAAGCTGAAA  >  minE/2661798‑2661859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑