Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	246898	246956	59	13 [0]	[0] 48	phoR	sensory histidine kinase in two‑component regulatory system with PhoB

GGAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTTAC  >  minE/246957‑247003 |                                               ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:337882/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2403008/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2448527/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2568833/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2694270/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2813409/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2887913/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2889435/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:3084332/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:3149996/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:3272647/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:332561/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2310165/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:406602/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:440010/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:454868/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:488812/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:531061/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:740922/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:813217/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:876784/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:944416/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:971979/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:977513/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1836060/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1076042/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1086132/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1124339/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1328347/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1367840/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1382005/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1410227/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1501500/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1615357/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1629935/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1723910/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1011032/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1885948/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1894105/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1895308/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1949144/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:1976785/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:202996/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2174147/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2201252/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2205974/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2253243/47‑1 (MQ=255) ggAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTtac  <  1:2303527/47‑1 (MQ=255) |                                               GGAAGGGGCGCGGCGTAACTTTTTTGCCAACGTGAGCCATGAGTTAC  >  minE/246957‑247003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑