Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	771372	771399	28	22 [0]	[0] 70	hflD	predicted lysogenization regulator

CTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTA  >  minE/771400‑771461 |                                                              cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATgc                   >  1:2799762/1‑45 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATg                    >  1:279414/1‑44 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCt   >  1:2470205/1‑61 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCt   >  1:3276191/1‑61 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCt   >  1:2823827/1‑61 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCt   >  1:1141891/1‑61 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2642509/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:270634/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2746369/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:260188/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2802202/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2535029/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2908178/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:3060143/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:3061301/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:3218913/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:3230865/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:413925/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:351538/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:571991/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1097695/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:828451/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:814664/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:762817/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:724445/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:612063/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:60801/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:594748/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:979505/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:545889/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:53180/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:503720/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:480421/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:469566/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:442423/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:418665/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1634936/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1099334/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1114448/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1210097/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1213789/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1214828/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1237813/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1370938/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1418393/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1484780/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1532663/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1555979/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1573229/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1575105/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1598659/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:245598/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2075757/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:243874/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2429976/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2406321/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2251526/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2235128/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2197697/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2120354/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2114558/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1694906/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:2043929/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1955992/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1945063/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1895378/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1798058/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGACaa          >  1:468470/1‑54 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGAGCGGGCCAAGCGGGCTa  >  1:1616127/1‑62 (MQ=255) cTTGTGGGCTTTGCAGTACAGCAGGAGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTa  >  1:1846875/1‑62 (MQ=255) |                                                              CTTGTGGGCTTTGCAGTACAGCAGGGGAACCGGTGACCTGAATGCGCGGGCCAAGCGGGCTA  >  minE/771400‑771461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑