Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1410760	1410763	4	55 [0]	[0] 91	bcr	bicyclomycin/multidrug efflux system

TGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTA  >  minE/1410764‑1410814 |                                                   tGTCACCAGCATGCCAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2096834/1‑51 (MQ=255) tGTCACCAGCATGACAAATGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2497023/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGATCTCTTCTTTCGGGTa  >  1:441224/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAAc                >  1:974461/1‑37 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACtcttct          >  1:546655/1‑43 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACtcttc           >  1:1043905/1‑42 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2707175/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:3161458/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:3128750/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:309122/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2954201/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2914308/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2895961/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2823263/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:922306/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2799152/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:3192706/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:26861/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2609268/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2592780/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2591040/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2574284/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2566598/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2533304/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2522248/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:235940/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:627356/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:780554/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:756938/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:718975/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:699308/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:695669/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:686065/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:683731/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:641162/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:640626/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:638351/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:3174896/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:588835/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:562305/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:543974/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:50783/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:920948/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:428390/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:423603/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:3241031/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:810165/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1360617/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1521826/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1482948/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1469664/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1469611/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1455080/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1422116/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1404459/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1384562/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1361980/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1361711/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1523235/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1352408/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1330931/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1218404/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1186194/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1183622/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1170376/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1167914/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1158334/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1124382/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1111054/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2060274/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2295957/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2277559/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2250816/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2243051/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2190115/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2183664/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2182003/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2176619/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2130369/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2100518/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2427733/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:2011125/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1806157/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1782441/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1716789/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1711851/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1682381/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1655182/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1630926/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1567746/1‑51 (MQ=255) tGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTa  >  1:1543258/1‑51 (MQ=255) |                                                   TGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTA  >  minE/1410764‑1410814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑