Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1520862	1520875	14	22 [0]	[0] 23	truA	pseudouridylate synthase I

GCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCA  >  minE/1520876‑1520937 |                                                              gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTTCCATCa  <  1:943193/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:2896680/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:873679/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:764666/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:726738/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:697054/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:616280/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:422341/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:3279649/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:3122637/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:3058914/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:293970/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:1101558/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:2765416/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:266328/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:2334512/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:2330750/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:2200210/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:2128132/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:1978259/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:1826234/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:1465435/62‑1 (MQ=255) gCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCa  <  1:1421098/62‑1 (MQ=255) |                                                              GCTGGTCGGACATTAGTACAGATACTCCTGCACCAGTTTCTCGGCGATTTTTACTGCCATCA  >  minE/1520876‑1520937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑