Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1804668	1804687	20	99 [0]	[0] 85	emrA	multidrug efflux system

ATTATTGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCG  >  minE/1804688‑1804748 |                                                             attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2908960/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:3095028/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:3070261/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2986935/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2984403/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2983099/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2957963/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2954818/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2933895/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2929926/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2912908/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:3100148/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2908435/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2846148/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2832272/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2786070/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2746045/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2733865/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2721407/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2670995/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2664283/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2643452/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:698498/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:969198/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:916409/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:857106/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:815034/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:751675/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:749145/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:740357/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:736269/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:718817/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:716496/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2641368/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:593564/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:576433/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:498196/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:444486/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:3284744/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:3237440/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:3222527/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:3204297/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:312545/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1732011/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2051537/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2010412/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2008893/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1970650/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1938468/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1913038/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1880989/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1834429/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1820833/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1757840/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2083676/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1723516/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1694901/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:164338/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1606361/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:160307/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1367744/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1355139/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1208078/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1158541/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2459348/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2628814/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2621486/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2615155/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2560429/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2559711/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2551855/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2477831/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2469696/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2469217/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2467520/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:1081202/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2456026/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2452150/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2445469/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2427920/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2419171/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2362328/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2349204/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2316524/1‑61 (MQ=255) attattGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCg  >  1:2267756/1‑61 (MQ=255) |                                                             ATTATTGCCGTAGCGATAGGGATTTATTGGTTTTTGGTACTGCGTCACTTCGAAGAAACCG  >  minE/1804688‑1804748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑