Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1938349	1938375	27	7 [0]	[0] 26	xerD	site‑specific tyrosine recombinase

GCTGGGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAT  >  minE/1938376‑1938437 |                                                              gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGa   >  1:2058767/1‑61 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:2635849/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:987009/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:961031/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:772258/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:765027/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:3217524/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:2999480/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:298918/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:2963190/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:2789730/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:2712882/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:2707291/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:2672086/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:1111960/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:2260803/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:2118918/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:1975382/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:1938769/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:1934967/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:1440102/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:1351037/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:1342570/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:1290437/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:1266439/1‑62 (MQ=255) gctggGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAt  >  1:1184707/1‑62 (MQ=255) |                                                              GCTGGGAAACAACACGTCAATTGACACACCATTCAGCAGCCACGGACGCCCATGTTCCAGAT  >  minE/1938376‑1938437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑