| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,763,613 | 0 | A | T | 66.8% | 207.2 / 250.9 | 238 | noncoding (231/1542 nt) | rrsG | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (13/66); new base T (0/159); total (13/225) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.92e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.94e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 239 total aligned reads displayed.
TCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAT > minE/1763562‑1763662 | tcgtcgCCTTTGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1256210/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2533083/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:3041848/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2892542/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2877665/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:283417/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2807549/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2780488/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2765399/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2742409/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2674579/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2665688/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:3191817/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2514763/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2491795/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2460122/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2444318/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2397069/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2323259/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2285934/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2235366/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:532474/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:952475/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:927228/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:905542/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:792729/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:769204/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:683665/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:668866/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:601261/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:578795/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:3070221/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:529568/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:486441/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:457134/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:445121/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:407513/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:3262981/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:3240764/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:3231460/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1071889/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1287794/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1549152/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1561483/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1454558/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1581091/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1423923/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1589070/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1369315/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:160451/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1678766/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:130150/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1723286/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:181707/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1838727/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1880201/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1044731/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1221282/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1966148/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1989683/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:208099/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1131563/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1127165/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:1087900/62‑3 (MQ=2)tcgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2117107/62‑3 (MQ=2) cgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:146972/61‑3 (MQ=2) cgtcgCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGAtag < 1:2051456/61‑3 (MQ=2) gTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGcc > 1:977674/1‑60 (MQ=255) gTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGcc > 1:1948678/1‑60 (MQ=255) gTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGcc > 1:2373628/1‑60 (MQ=255) gTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGcc > 1:1163001/1‑60 (MQ=255) gTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGcc > 1:1955502/1‑60 (MQ=255) ccaccaACAAGCTAATCCCATCTTGGCACATCCGATGGCAAGAGGCCCGAAGGTCCGCctct < 1:3178471/62‑1 (MQ=255) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:2249713/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:2731412/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:648957/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:63432/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:561591/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:296468/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:881632/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:2106778/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:215286/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:419414/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:3122422/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:368440/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:328699/62‑1 (MQ=40) ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCctct < 1:2197737/62‑1 (MQ=40) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:2319695/61‑1 (MQ=33) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:2427046/61‑1 (MQ=33) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:2007741/61‑1 (MQ=33) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:1328021/61‑1 (MQ=33) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:708851/61‑1 (MQ=33) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:2628182/61‑1 (MQ=33) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:1693439/61‑1 (MQ=33) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:1381029/61‑1 (MQ=33) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:1395244/61‑1 (MQ=33) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:3055483/61‑1 (MQ=33) cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:1511793/61‑1 (MQ=33) cccATCTGGGCAAATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:1402733/61‑1 (MQ=18) aTCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAt < 1:3205552/58‑1 (MQ=33) | TCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACAT > minE/1763562‑1763662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |