| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | minE | 2,574,911 | G→T | E196* (GAA→TAA) | glyS → | glycine tRNA synthetase, beta subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,574,911 | 0 | G | T | 95.8% | 71.4 / ‑2.7 | 24 | E196* (GAA→TAA) | glyS | glycine tRNA synthetase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (23/0); total (24/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
TTATGGGCGAGCCGGAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAG > minE/2574897‑2574958 | ttATGGGCGAGCCGTAATTCACCATCGATAACGCCTATCAGTATCCGGAAATTCTGCGTGAg > 1:363308/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGa > 1:3243026/1‑61 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGa > 1:1605805/1‑61 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:2394100/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:936289/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:593789/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:3149808/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:3045466/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:3041890/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:2624456/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:249578/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:2403963/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:1130637/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:2028852/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:1805735/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:1742275/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:1691282/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:1563540/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:1545658/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:139434/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:1246120/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCACCATCGATAACGCCGATCAGAATCCGGAAATTCTGCGTGAg > 1:2859971/1‑62 (MQ=255)ttATGGGCGAGCCGTAATTCAACATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGa > 1:1329364/1‑61 (MQ=255)ttATGGGCGAGCCGGAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAg > 1:1597647/1‑62 (MQ=255) | TTATGGGCGAGCCGGAATTCACCATCGATAACGCCGATCAGTATCCGGAAATTCTGCGTGAG > minE/2574897‑2574958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |