| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 937423 | NA (NA) | 8 (0.150) | 4/106 | 3.0 | 15.6% | intergenic (+329/+78) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/predicted DNA‑binding transcriptional regulator |
| ? | minE | = 2708585 | 49 (0.820) | intergenic (+123/‑167) | trpS/yhfZ | tryptophanyl‑tRNA synthetase/conserved hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/937356‑937423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTC < minE/2708585‑2708510 GATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:922824/1‑71GATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:636587/1‑71 GCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTG < 1:1713909/70‑1 GGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAT > 1:2973857/1‑70 GCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAT > 1:1873715/1‑69 GCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:977027/1‑65 GCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:74025/1‑65 CGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCG > 1:1816251/1‑71 AACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTG > 1:2860621/1‑62 TCCTGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTATCA < 1:337809/70‑1 TCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTATCA < 1:96364/70‑1 GGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGAGTAGGC > 1:1301981/1‑47 AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:1723739/1‑41 AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:1912398/1‑41 AAACCCTTCAAATCCAATAGATTGCAGTCAACGTGTAGGCCTGATGCGCTACGC < 1:1561101/54‑1 TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTAT > 1:4665/1‑52 TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTAT > 1:81514/1‑52 TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTAT > 1:2924323/1‑52 TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTA > 1:1428652/1‑51 TGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGT > 1:2460034/1‑71 TGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGT > 1:2413218/1‑71 GATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGC < 1:2311970/58‑1 GATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGC < 1:1280144/58‑1 GATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAA < 1:313918/37‑1 GATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAA < 1:49268/37‑1 GATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAA < 1:55003/37‑1 GATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAA < 1:646732/37‑1 GATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAA < 1:662456/37‑1 ATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTC < 1:2497112/71‑1 TGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCG > 1:563128/1‑58 TGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCG > 1:1437155/1‑58 TGCGCTACGCTTATCAGGCCTACATTTCCTTGCAA > 1:769669/1‑35 GATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/937356‑937423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTC < minE/2708585‑2708510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |