| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 937423 | NA (NA) | 8 (0.150) | 4/106 | 3.0 | 12.2% | intergenic (+329/+78) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/predicted DNA‑binding transcriptional regulator |
| ? | minE | = 2911852 | 65 (1.090) | intergenic (+147/+59) | mgtA/yjgF | magnesium transporter/ketoacid‑binding protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/937356‑937423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACG < minE/2911852‑2911776 GATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:636587/1‑71GATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:922824/1‑71 GCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTG < 1:1713909/70‑1 GGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAT > 1:2973857/1‑70 GCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAT > 1:1873715/1‑69 GCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:977027/1‑65 GCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:74025/1‑65 CGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCG > 1:1816251/1‑71 AACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTG > 1:2860621/1‑62 TCCTGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTATCA < 1:337809/70‑1 TCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTATCA < 1:96364/70‑1 GGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGAGTAGGC > 1:1301981/1‑47 AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:1723739/1‑41 AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCC > 1:1912398/1‑41 AAACCCTTCAAATCCAATAGATTGCAGTCAACGTGTAGGCCTGATGCGCTACGC < 1:1561101/54‑1 TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTAT > 1:4665/1‑52 TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTAT > 1:81514/1‑52 TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTAT > 1:2924323/1‑52 TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATGCGCTACGCTTA > 1:1428652/1‑51 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGAT > 1:1924017/1‑65 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGAT > 1:3088307/1‑65 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATT < 1:2904575/44‑1 GCCTGATGCGCTACGCTTATCACGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGAT > 1:2763224/1‑65 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATT > 1:696671/1‑71 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATT > 1:3047841/1‑71 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTA > 1:601460/1‑44 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTA > 1:1109675/1‑44 CTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTA > 1:1750349/1‑44 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATT > 1:2465276/1‑70 GATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTA > 1:2387969/1‑71 ATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAAT < 1:2648540/38‑1 ATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAAT < 1:2575059/38‑1 ATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAAT < 1:895612/38‑1 ATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAAT < 1:161295/38‑1 ATGCGCTACGCTTATCAGGCCTACGTGACTCCTGCAAT < 1:121117/38‑1 TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACG > 1:1915168/1‑71 TGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACG > 1:1082052/1‑71 GATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/937356‑937423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACG < minE/2911852‑2911776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |