| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1874384 = | 75 (1.260) | 4 (0.080) | 4/102 | 3.0 | 6.0% | coding (517/672 nt) | ygcF | conserved hypothetical protein |
| ? | minE | 1874424 = | 61 (1.210) | coding (477/672 nt) | ygcF | conserved hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCACAGGCACTGGAGCGAGCCAACGAAATCAAGCATCCAGTGGGGCGCGTACGCGATATTGAAGCACTGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1874457‑1874384‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactggatgCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTTTG > minE/1874424‑1874491 GTCACAGGCACTGGAGCGAGCCAACGAAATCAAGCATCCAGTGGGGCGCGTACGCGATATTGAAGCACTG > 1:1376689/1‑70GTCACAGGCACTGGAGCGAGCCAACGAAATCAAGCATCCAGTGGGGCGCGTACGCGATATTGAAGCACTG > 1:705943/1‑70 CACAGGCACTGGAGCGAGCCAACGAAATCAAGCATCCAGTGGGGCGCGTACGCGATATTGAAGCACTGGAT > 1:1603097/1‑71 GAGCGAGCCAACGAAATCAAGCATCCAGTGGGGCGCGTACGCGATATTGAAGCACTGGA > 1:117043/1‑59 GAGCGAGCCAACGAAATCAAGCATCCAGTGGGGCGCGTACGCGATATTGAAGCACTGGA > 1:1890429/1‑59 AGCATCCAGTGGGGCGCGTACGCGATATTGAAGCAC > 1:948062/1‑36 AGCATCCAGTGGGGCGCGTACGCGATATTGAAGCAC > 1:1832752/1‑36 AGCATCCAGTGGGGCGCGTACGCGATATTGAAGCAC > 1:2927921/1‑36 GCATCCAGTGGGGCGCGTACGCGATATTGAAGCACTGGATGCTTGATTTCG > 1:592961/1‑51 TCCAGTGGGGCGCGTACGCGATATTCAAGCACTGGATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGA < 1:123417/71‑1 CAGTGGGGCGCGTACGCGATATTGAAGCACTGGATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGAC > 1:2343595/1‑70 GGCGCGTACGCGATATTGAAGCACTGGATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTT < 1:2511169/71‑1 CTGGATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGC > 1:490572/1‑71 CTGGATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGC > 1:1532273/1‑71 CTGGATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGAAAACACTTCATAGCCGCCGCGCATGTTCAGC > 1:367724/1‑71 GGATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTT > 1:2258915/1‑71 GGATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATA < 1:1883565/50‑1 GATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTTT > 1:153354/1‑71 GATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTT < 1:1926236/70‑1 GATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTT < 1:2261820/70‑1 GATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTT < 1:665056/70‑1 GATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTT < 1:1327172/70‑1 GATGCTTGATTTCGTTGGCGCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTTT < 1:223341/71‑1 ATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTTTG < 1:2166487/71‑1 ATGCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTTTG < 1:2387968/71‑1 GTCACAGGCACTGGAGCGAGCCAACGAAATCAAGCATCCAGTGGGGCGCGTACGCGATATTGAAGCACTGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1874457‑1874384‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactggatgCTTGATTTCGTTGGCTCGCTCCAGTGCCTGTGACAACACTTCATAGCCGCCGCGCATGTTCAGCTTTG > minE/1874424‑1874491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |