| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | minE | 17,199 | G→T | intergenic (+3/‑57) | nhaA → / → nhaR | sodium‑proton antiporter/DNA‑binding transcriptional activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 17,199 | 0 | G | T | 100.0% | 148.8 / NA | 44 | intergenic (+3/‑57) | nhaA/nhaR | sodium‑proton antiporter/DNA‑binding transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (26/18); total (26/18) | |||||||||||
GTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCA > minE/17132‑17262 | gTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGAc < 1:2268599/71‑1 (MQ=255) ttCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACg > 1:2587953/1‑71 (MQ=255) cTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGt > 1:1325317/1‑71 (MQ=255) cTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGt > 1:2050120/1‑71 (MQ=255) cTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGt > 1:1677614/1‑71 (MQ=255) tctcTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGtt < 1:2704909/69‑1 (MQ=255) tctcTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGtt < 1:3087405/69‑1 (MQ=255) tAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCa > 1:2767088/1‑70 (MQ=255) aTTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGa < 1:59092/64‑1 (MQ=255) aTTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGa < 1:2113848/64‑1 (MQ=255) tGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTAcc > 1:678958/1‑57 (MQ=255) tGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTAcc > 1:1205171/1‑57 (MQ=255) tGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTAcc > 1:2017434/1‑57 (MQ=255) tGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAAc > 1:1070749/1‑71 (MQ=255) ggATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGtt > 1:1584753/1‑52 (MQ=255) ggATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGtt > 1:1453374/1‑52 (MQ=255) ggATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGtt > 1:468401/1‑52 (MQ=255) ggATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGtt > 1:577155/1‑52 (MQ=255) ggATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGtt > 1:2591179/1‑52 (MQ=255) ggATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATaaa > 1:1594084/1‑69 (MQ=255) ggATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACg > 1:1687587/1‑71 (MQ=255) ggATACAGCTGGTTACGCGTTCGTTTGCGTCCAACAGTTTGACATGACGGTTTACCGGGGAGCCATAAAc > 1:146471/1‑70 (MQ=255) gTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCtttt < 1:3182877/70‑1 (MQ=255) ttACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCa < 1:2381326/71‑1 (MQ=255) aCGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGc > 1:2971190/1‑59 (MQ=255) aCGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGc > 1:793510/1‑59 (MQ=255) aCGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGc > 1:893557/1‑59 (MQ=255) aCGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGc > 1:1228144/1‑59 (MQ=255) aCGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGc > 1:1228470/1‑59 (MQ=255) cgttcgttTGCGTCCATCAGTTTAACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGtt < 1:1521350/71‑1 (MQ=255) ttcgttTGCGTCCATCAGTTTGACATGACGGTTTa < 1:2619770/35‑1 (MQ=255) ttcgttTGCGTCCATCAGTTTGACATGACGGTTTa < 1:1407645/35‑1 (MQ=255) ttcgttTGCGTCCATCAGTTTGACATGACGGTTTa < 1:1430847/35‑1 (MQ=255) ttcgttTGCGTCCATCAGTTTGACATGACGGTTTa < 1:1964793/35‑1 (MQ=255) ttcgttTGCGTCCATCAGTTTGACATGACGGTTTa < 1:2361068/35‑1 (MQ=255) cgttTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCt > 1:1107737/1‑53 (MQ=255) cATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGaaa > 1:489239/1‑71 (MQ=255) cATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGaaa > 1:1186072/1‑71 (MQ=255) aTCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAAt < 1:1115695/71‑1 (MQ=255) tCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCt < 1:1619654/41‑1 (MQ=255) tCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCt < 1:2661040/41‑1 (MQ=255) aGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGa < 1:3056491/70‑1 (MQ=255) aGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGa < 1:72909/70‑1 (MQ=255) tttGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCa > 1:237489/1‑71 (MQ=255) | GTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAGCA > minE/17132‑17262 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |