| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | minE | 2,367,537 | C→T | intergenic (‑85/‑105) | pepQ ← / → fadB | proline dipeptidase/fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase and 3‑hydroxyacyl‑CoA dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,367,537 | 0 | C | T | 100.0% | 87.8 / NA | 27 | intergenic (‑85/‑105) | pepQ/fadB | proline dipeptidase/fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase and 3‑hydroxyacyl‑CoA dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (16/11); total (16/11) | |||||||||||
GACCTTAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATC > minE/2367474‑2367602 | gACCTTAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCgg > 1:979797/1‑71 (MQ=255) ccTTAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCa > 1:2095058/1‑71 (MQ=255) cTTAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCAt < 1:1019620/71‑1 (MQ=255) cTTAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCAt < 1:237801/71‑1 (MQ=255) tAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCAttt > 1:2946625/1‑71 (MQ=255) tcCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTa > 1:2243556/1‑70 (MQ=255) gCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCtt > 1:876275/1‑65 (MQ=255) gCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCtt > 1:677922/1‑65 (MQ=255) cTTAGCACATCGTTCATACAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCa > 1:2125818/1‑55 (MQ=255) tAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTtttgtt > 1:1850958/1‑71 (MQ=255) aGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCtttt < 1:1020452/67‑1 (MQ=255) aGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTtttgt < 1:3177712/69‑1 (MQ=255) aGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTtttgt < 1:1141509/69‑1 (MQ=255) aGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTtttg < 1:2688625/68‑1 (MQ=255) tCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCatat < 1:3046236/71‑1 (MQ=255) tCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCata > 1:1875903/1‑70 (MQ=255) tCCAGAGCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTtttg < 1:1537677/55‑1 (MQ=255) agagCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAacac > 1:2387317/1‑70 (MQ=255) gCGTGATTTCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACaaaa < 1:831303/71‑1 (MQ=255) tttCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATacaca > 1:1683810/1‑71 (MQ=255) ttCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAAcaca > 1:2452543/1‑61 (MQ=255) tCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACt > 1:391621/1‑71 (MQ=255) tCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACt > 1:1529794/1‑71 (MQ=255) tCTGCCGAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACt > 1:1052307/1‑71 (MQ=255) gAGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACt > 1:1847716/1‑71 (MQ=255) aGCGTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTc < 1:2314643/71‑1 (MQ=255) gTGATTAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATc < 1:778741/71‑1 (MQ=255) | GACCTTAAGTCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATC > minE/2367474‑2367602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |