| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | minE | 2,155,847 | +T | coding (1001/1173 nt) | obgE ← | GTPase involved in cell partioning and DNA repair |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,155,843 | 1 | . | T | 95.6% | 282.1 / 7.3 | 90 | coding (1005/1173 nt) | obgE | GTPase involved in cell partioning and DNA repair |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base T (0/86); total (2/88) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.50e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.79e-01 | |||||||||||
CATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGG‑T‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACT > minE/2155792‑2155899 | caTGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGG‑T‑TTTCAATg > 1:316089/1‑61 (MQ=255)caTGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGG‑T‑TTTCAATg > 1:20241/1‑61 (MQ=255) cccGGT‑T‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:319149/61‑1 (MQ=255) ccGGGTT‑TTTCACTGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:1019248/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:678644/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:822420/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:800316/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:7923/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:768466/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:765505/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:757306/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:724820/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:699276/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:694884/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:685791/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:526667/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:654932/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:618319/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:595755/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:590246/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:573750/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:569501/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:552723/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:538570/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:49970/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:904096/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:990640/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:980346/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:975190/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:970004/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:969874/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:967611/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:967372/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:939088/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:92652/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:919395/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:823956/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:903540/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:897671/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:894556/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:880865/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:87422/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:853409/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:849589/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:837258/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:83489/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:833735/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:204716/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:315264/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:308060/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:305562/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:302487/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:291792/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:281700/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:254576/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:251182/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:238099/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:214856/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:336282/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:20317/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:191103/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:181480/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:174248/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:163044/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:162652/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:1541/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:149032/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:132160/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:109977/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:385550/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:489330/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:471996/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:471216/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:464992/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:44955/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:445585/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:433563/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:419065/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:417892/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:393561/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:379259/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:37650/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:371199/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:369150/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:350368/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:345816/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:341956/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:338053/62‑1 (MQ=255) ccGGGTT‑TTTCAATGATAAAGGTCATCAAATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:507718/62‑1 (MQ=255) ccGGG‑TGTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:696932/62‑1 (MQ=255) | CATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGG‑T‑TTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACT > minE/2155792‑2155899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |