Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1213558	1213580	23	100 [0]	[0] 2	kdgR	predicted DNA‑binding transcriptional regulator

CGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAT  >  minE/1213517‑1213557                                         | cGCCCTCAAGAATTTGCTTCACTTCCTCGCGATCGCGCCAt  >  1:517134/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGCTCGCGCCAt  >  1:116644/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:517960/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:624225/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:609060/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:607980/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:605368/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:596473/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:595660/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:560030/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:552592/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:549620/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:546982/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:528826/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:519147/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:636144/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:500456/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:479879/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:479267/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:47829/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:477536/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:465412/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:455464/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:451409/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:440123/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:1016886/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:793991/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:99528/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:985293/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:910057/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:873873/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:868390/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:859301/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:855733/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:846956/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:834210/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:825299/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:810056/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:435419/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:771254/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:770742/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:755602/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:740808/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:734615/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:724031/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:688054/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:670423/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:667903/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:666349/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:644924/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:189160/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:43336/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:268383/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:267031/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:255577/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:235374/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:228298/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:216511/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:213110/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:20661/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:205601/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:195704/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:276493/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:170617/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:167809/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:16034/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:152808/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:147627/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:109648/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:103386/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:1032334/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:1021578/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:1020449/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:1017707/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:379609/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:430862/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:425563/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:425542/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:424820/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:412793/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:41243/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:411076/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:404536/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:397023/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:389612/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:283147/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:378041/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:374992/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:364482/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:355252/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:355044/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:347165/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:3452/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:326736/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:312677/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:292507/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:2892/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:288346/1‑41 (MQ=255) cGCCCTCAAGAATTTGCTTCACTTCATCGCGATAGCGCCAt  >  1:931589/1‑41 (MQ=255) cGCACTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAt  >  1:991834/1‑41 (MQ=255)                                         | CGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCAT  >  minE/1213517‑1213557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑