Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1442393	1442410	18	38 [0]	[0] 47	rcsD	phosphotransfer intermediate protein in two‑component regulatory system with RcsBC

AAATTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCG  >  minE/1442331‑1442392                                                              | aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGGAGgcg  <  1:481309/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:70355/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:510129/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:1029051/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:5783/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:607186/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:641951/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:652050/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:667849/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:576061/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:81705/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:913347/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:9142/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:919412/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:933095/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:939797/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:968958/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:127114/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:415791/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:415396/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:402819/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:143249/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:384824/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:163566/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:295426/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:171998/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:2490/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:284069/62‑1 (MQ=255) aaaTTTTCATTATTCGCGATCACGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:922260/62‑1 (MQ=255)  aaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:789030/61‑1 (MQ=255)  aaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:881603/61‑1 (MQ=255)  aaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:805871/61‑1 (MQ=255)  aaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:467349/61‑1 (MQ=255)  aaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:733164/61‑1 (MQ=255)  aaTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:396098/61‑1 (MQ=255)   aTTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:277678/60‑1 (MQ=255)            attCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:521846/51‑1 (MQ=255)                        gATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGgcg  <  1:352090/39‑1 (MQ=255)                                                              | AAATTTTCATTATTCGCGATCAGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCG  >  minE/1442331‑1442392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑