Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1700828	1700892	65	37 [0]	[0] 17	hcaR	DNA‑binding transcriptional regulator

TTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACC  >  minE/1700768‑1700827                                                            | ttcTACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:374617/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:778674/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:569668/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:601813/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:614077/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:621531/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:691912/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:715133/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:729136/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:160669/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:778930/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:820149/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:837033/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:838380/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:85098/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:860659/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:873781/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:991015/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:514002/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:1032172/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:187090/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:208305/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:22068/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:252832/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:326847/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:334916/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:337120/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:372765/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:389931/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:41721/60‑1 (MQ=255) ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:476698/60‑1 (MQ=255)  tcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:270007/59‑1 (MQ=255)  tcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:913470/59‑1 (MQ=255)  tcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:914609/59‑1 (MQ=255)           tCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:291128/50‑1 (MQ=255)           tCAGTAAAGCAATCGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:22055/50‑1 (MQ=255)             aGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAAcc  <  1:551642/48‑1 (MQ=255)                                                            | TTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACC  >  minE/1700768‑1700827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑