Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1828772	1828894	123	64 [0]	[0] 85	mutS	methyl‑directed mismatch repair protein

CATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTATGG  >  minE/1828713‑1828771                                                           | cATCTTTACCCGCGTAGGCGCGGCAGATGCCCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:24713/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:516584/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:664418/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:655136/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:620477/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:617/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:587658/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:580266/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:53843/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:723306/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:515752/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:504147/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:49277/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:480487/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:468375/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:445024/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:442129/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:718941/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:438200/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:741862/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:743526/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:795559/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:855202/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:864206/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:867777/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:891823/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:896367/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:911529/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:91590/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:916138/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:947060/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:958077/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:971708/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:256658/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:1030733/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:104431/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:106840/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:138144/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:147797/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:164873/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:165347/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:16939/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:183353/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:192432/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:215540/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:223090/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:225440/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:23110/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:255777/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:1009498/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:264787/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:266980/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:277681/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:296975/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:341228/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:346874/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:366927/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:379077/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:383875/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:404240/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:424222/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:427680/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTAtgg  >  1:428834/1‑59 (MQ=255) cATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTGAtgg  >  1:287748/1‑59 (MQ=255)                                                           | CATCTTTACCCGCGTAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTTATGG  >  minE/1828713‑1828771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑