Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1885684	1885687	4	84 [0]	[0] 71	barA	hybrid sensory histidine kinase, in two‑component regulatory system with UvrY

AAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTC  >  minE/1885624‑1885683                                                            | aaGTATTCCATTCCCACTACTCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:509482/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:571065/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:725738/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:718611/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:699412/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:692526/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:680870/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:66398/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:656810/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:602532/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:590141/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:574924/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:749733/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:546860/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:544660/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:532729/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:526373/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:526110/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:516455/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:508543/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:100639/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:884467/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:9992/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:954091/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:954010/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:947665/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:914494/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:908031/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:897076/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:890393/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:887596/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:5000/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:87044/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:851829/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:839131/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:825063/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:815680/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:780859/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:775907/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:766496/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:751595/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:214361/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:492315/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:255919/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:253443/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:247865/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:247331/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:226911/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:225700/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:225173/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:218906/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:215590/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:25957/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:164011/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:163912/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:154771/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:148613/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:127873/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:126700/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:113781/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:111203/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:101227/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:363549/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:490559/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:48924/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:488015/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:476776/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:46545/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:464760/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:444049/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:41599/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:274985/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:35947/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:358004/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:335991/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:321538/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:285881/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:284392/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:283436/60‑1 (MQ=255) aaGTATTCCATTCCCACTACGCAGCACGCTGCATGAAGTCGTTACTCTGCTGGCACAttc  <  1:337766/60‑1 (MQ=255)  aGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:854450/59‑1 (MQ=255)  aGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:799862/59‑1 (MQ=255)                    cGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:477384/41‑1 (MQ=255)                        gcaCGCTGGATGAAGTCGTTACTCTGCTGGCACAttc  <  1:380572/37‑1 (MQ=255)                                                            | AAGTATTCCATTCCCACTACGCAGCACGCTGGATGAAGTCGTTACTCTGCTGGCACATTC  >  minE/1885624‑1885683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑