Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2401923	2402059	137	62 [0]	[0] 2	xerC	site‑specific tyrosine recombinase

CAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACGG  >  minE/2401862‑2401922                                                             | cAGCCCCACCAGCTTAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:283914/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:72847/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:843045/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:831620/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:829410/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:79046/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:77974/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:771520/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:758567/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:843256/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:670938/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:655822/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:653382/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:586252/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:577695/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:555885/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:545972/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:544891/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:844204/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:864418/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:869324/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:871086/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:874883/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:896323/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:903200/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:920011/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:922938/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:928178/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:94911/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:952227/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:964844/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:996175/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:359140/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:1037376/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:187721/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:189884/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:207795/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:223851/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:263828/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:285341/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:294520/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:294763/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:300542/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:324454/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:334415/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:1020181/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:360476/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:366807/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:394528/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:399596/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:400412/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:42793/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:431357/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:458448/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:465846/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:472854/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:497278/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:520943/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:543381/61‑1 (MQ=255) cAGCCCCACCAGCTCAGAAAGACGCAGAACCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:174095/61‑1 (MQ=255)  aGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:175474/60‑1 (MQ=255)           aGCTCATAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACgg  <  1:506385/51‑1 (MQ=255)                                                             | CAGCCCCACCAGCTCAGAAAGACGCAGACCCGCGCCGTACATCACTTCCAGCATTGCACGG  >  minE/2401862‑2401922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑