Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	5245	5366	122	35 [1]	[0] 41	yaaX	hypothetical protein

CCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCA  >  minE/5191‑5247                                                      |    ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:746917/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:511073/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:530774/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:532485/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:577288/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:592282/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:648252/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:677839/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:67859/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:498191/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:766029/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:77152/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:789448/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:826657/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:897610/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:902561/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:915927/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:931653/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:239475/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:1027293/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:128914/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:146305/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:154370/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:154812/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:176960/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:203612/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:222330/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:244976/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:259313/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:302995/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:31051/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:360100/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:382755/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt     >  1:476503/1‑54 (MQ=255) ccGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCa  >  1:100873/1‑57 (MQ=255)                                                      |    CCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCA  >  minE/5191‑5247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑