Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2888283	2888569	287	50 [0]	[0] 15	ytfL	predicted inner membrane protein

CTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATT  >  minE/2888229‑2888282                                                      | ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:812866/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:553610/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:588988/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:601998/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:627395/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:631949/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:632888/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:634315/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:649117/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:681050/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:756821/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:760107/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:795031/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:545312/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:814113/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:822475/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:8469/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:915280/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:916585/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:934203/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:947403/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:960878/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:970067/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:97905/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:990277/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:338029/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:110245/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:138996/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:176329/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:194789/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:201528/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:234374/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:239114/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:24262/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:275842/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:279868/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:308777/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:1037724/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:373197/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:401676/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:432621/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:442764/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:495413/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:495492/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:509120/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:530106/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:537964/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:543837/54‑1 (MQ=255) ctctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:544595/54‑1 (MQ=255)   ctTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCAtt  <  1:166552/52‑1 (MQ=255)                                                      | CTCTTCCAGCCCCTGACCGACCAGATCGCCCATCAGCGTGGTCATCACGTCATT  >  minE/2888229‑2888282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑