Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1206335	1206376	42	39 [0]	[0] 20	manX	fused mannose‑specific PTS enzyme IIAB components

GCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAA  >  minE/1206377‑1206438 |                                                              gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:110706/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:907830/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:850152/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:794422/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:728623/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:681099/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:611031/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:597301/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:526460/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:421828/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:411209/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:408085/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:392795/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:352513/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:308973/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:255828/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:186184/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:177487/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:105302/62‑1 (MQ=255) gcCAGCACCCGCTGCCGCAGCACAAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCaa  <  1:935414/62‑1 (MQ=255) |                                                              GCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAA  >  minE/1206377‑1206438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑