Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1742212	1742348	137	32 [0]	[0] 45	rpoE	RNA polymerase, sigma 24 (sigma E) factor

TTCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATC  >  minE/1742349‑1742410 |                                                              ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTc                       >  1:816706/1‑41 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACAt   >  1:841044/1‑61 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACAt   >  1:168487/1‑61 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACAt   >  1:833635/1‑61 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACAt   >  1:233895/1‑61 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:831910/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:995866/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:688143/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:730386/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:730887/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:740051/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:795440/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:816060/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:820400/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:941865/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:949274/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:606530/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:868033/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:871409/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:8875/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:922467/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:937419/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:939882/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:417644/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:232359/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:235472/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:246134/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:306471/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:321981/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:322076/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:327648/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:332555/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:354219/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:397666/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:657850/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:435704/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:466504/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:476827/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:48458/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:485235/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:485948/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:553931/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:555070/1‑62 (MQ=255) ttCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:603673/1‑62 (MQ=255) ttCGAAATTTATTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATc  >  1:776501/1‑62 (MQ=255) |                                                              TTCGAAATTTCTTTCAACGCGCCGCCACTTTCGAAGTTTTCAGCTTCAATGGCATCCACATC  >  minE/1742349‑1742410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑