| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,799,828 | 0 | T | G | 60.1% | 299.0 / 254.3 | 238 | A218A (GCT→GCG) | proW | glycine betaine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (44/51); new base G (143/0); total (187/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.86e-26 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 238 total aligned reads displayed.
TTTGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTCC > minE/1799781‑1799875 | tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTgc > 1:117762/1‑52 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:157294/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:770453/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:752557/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:306681/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:309548/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:202871/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:351977/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:844351/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:847382/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:654468/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:61396/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:41582/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:149903/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:910618/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:55819/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:1030504/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:1025745/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:518771/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTAt > 1:100787/1‑62 (MQ=255)tttGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGACGATTAt > 1:567389/1‑62 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCt > 1:980921/1‑37 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCt > 1:1000718/1‑37 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCt > 1:804048/1‑37 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:661358/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:51460/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:507487/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:517937/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:940477/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:914703/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:891902/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:572304/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:577048/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:611030/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:876351/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:862308/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:633104/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:645550/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:857718/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:781764/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:671464/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:823287/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:677261/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:68403/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:709506/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:812532/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:72915/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:737379/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:73975/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:792312/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:757390/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:766503/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:214763/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:325480/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:320326/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:291885/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:289091/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:284996/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:259832/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:24663/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:233123/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:503203/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:186759/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:174891/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:1707/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:160800/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:151337/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:130957/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:112307/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:355820/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:439152/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:457994/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:432040/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:462503/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:494424/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:411880/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:511660/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCCGTCTg > 1:370666/1‑38 (MQ=255) tgACGATCATCTTTGCGCTGCCGCCGATTATCAGTCTg > 1:228154/1‑38 (MQ=38) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:533940/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:162463/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:1023402/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:856695/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:96949/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:451851/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:189299/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:1005328/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:221665/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:586756/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:778916/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:257505/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:414509/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:270175/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:75159/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:625134/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:393126/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:379669/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:706953/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTcc < 1:338096/62‑1 (MQ=255) aCGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGAATAACCAGGTTcc < 1:547269/62‑1 (MQ=255) | TTTGGTATCGGTAACGTGCCGGGCGTGGTGGTGACGATCATCTTTGCTCTGCCGCCGATTATCCGTCTGACCATTCTGGGGATTAACCAGGTTCC > minE/1799781‑1799875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |