New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | minE | = 356642 | 61 (1.300) | 8 (0.180) | 5/116 | 3.4 | 12.1% | coding (175/867 nt) | folD | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
? | minE | = 356663 | 57 (1.260) | coding (154/867 nt) | folD | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
AAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/356571‑356642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcGCAAGCAAACGCAAGGCTTGTG < minE/356663‑356642 AAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTT > 1:289092/1‑71 TTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTCGCAAGCAAACGCAAGGCTTG < 1:33390/63‑1 TCATAAGAGCGGGAGACGAACCCGACTTCTTCGCAAGCAAACGCAAGGCTTGT < 1:1344269/53‑1 TCATAAGAGCGGGAGACGAACCCGACTTCTTCGCAAGCAAACGCAAGGCTTGT < 1:2383357/53‑1 TCATAAGAGCGGGAGACGAACCCGACTTCTTCGCAAGCAAACGCAAGGC < 1:2260102/49‑1 ATAAGAGCGGGAGACGAACCCGACTTCTTCGCAAGCAAACGCAAGGCTT > 1:436642/1‑49 ATAAGAGCGGGAGACGAACCCGACTTCTTCGCAAGCAAACGCAAGGCTT > 1:584890/1‑49 GCGGGAGACGAACCCGACTTCTTCGCAAGCAAACGCAAGGCTTG < 1:1123874/44‑1 AGACGAACCCGACTTCTTCGCAAGCAAACGCAAGGCTTGTG > 1:1055536/1‑41 AAGCTCCAGCAGCTCCGCTTCGCTGGTGGTTTCCGGGAGGTCATAAGAGCGGGAGACGAACCCGACTTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/356571‑356642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcGCAAGCAAACGCAAGGCTTGTG < minE/356663‑356642 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |