| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 574863 | 46 (0.980) | 4 (0.100) | 3/102 | 3.8 | 9.3% | coding (957/993 nt) | ybjX | conserved hypothetical protein |
| ? | minE | = 574890 | 39 (0.980) | coding (930/993 nt) | ybjX | conserved hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATGTTCTCACGCGTGCTGTGGCTGGCGCGCGGTCGCGCGGATTAACCGCGAAACATCGTGGCCATTTGTGGCTGAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/574785‑574863‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgaataCCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTTAATCCGC < minE/574890‑574822 AATGTTCTCACGAGTGCTGTGGCTGGCGCGCGGTCGCGCGGATTAACCGCGAAACATCGTGGCCATTTGTG > 1:742334/1‑71 CGCGTGCTGTGGCTGGCGCGCGGTCGCGCGGATTAACCGCGCAACATCGTGGCCATTTGTG > 1:279564/1‑61 GCGCGGTCGCGCGGATTAACCGCGAAACATCGTGGCCATTTGTGGCTG < 1:1036898/48‑1 GCGCGGATTAACCGCGAAACATCGTGGCCATTTGTGGCTG < 1:1288597/40‑1 GCGCAGATTAACCGCGAAACATCGTGGCCATTTGTGGCTG < 1:849019/40‑1 GATTAACCGCGAAACATCGTGGCCATTTGTGGCTGAATACCGTCGGCGCTATGAGATGCTCGACGCTATTC < 1:325403/71‑1 GATTAACCGCGAAACATCGTGGCCATTTGTGGCTGAATACCGTCGGCGCTATGAGATGCTCGACGCTATT > 1:1600509/1‑70 GATTAACCGCGAAACATCGTGGCCATTTGTGGCTGAATACCGTCGGCGCTATGAGATGCTCGACGCTATT > 1:2401833/1‑70 ACATCGTGGCCATTTGTGGCTGAATACCGTCGGCGCTATGAGAT < 1:1295854/44‑1 GGCTGAATACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTT < 1:2113812/71‑1 GAATACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTTAATC > 1:1458015/1‑71 GAATACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTTAATC > 1:2003949/1‑71 GAATACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTTAATC > 1:302070/1‑71 AATACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTTAATCC > 1:1054541/1‑71 AATACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTTAAT < 1:2029871/69‑1 AATACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTTAAT < 1:989419/69‑1 AATACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAA < 1:592620/45‑1 ATACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTTAAT < 1:257216/68‑1 ATACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTC > 1:334705/1‑59 TACCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTTAATCCGC > 1:1780403/1‑71 AATGTTCTCACGCGTGCTGTGGCTGGCGCGCGGTCGCGCGGATTAACCGCGAAACATCGTGGCCATTTGTGGCTGAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/574785‑574863‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgaataCCGTCGGCGCTATGAGATGCTCGACGCTATTCAGCCACAAATGGCCACGATGTTTCGCGGTTAATCCGC < minE/574890‑574822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |