New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	= 1563009	63 (1.340)	5 (0.110)	4/116	3.7	7.6%	coding (3016/3594 nt)	evgS	hybrid sensory histidine kinase in two‑component regulatory system with EvgA
	?	minE	= 1563028	61 (1.340)					coding (3035/3594 nt)	evgS	hybrid sensory histidine kinase in two‑component regulatory system with EvgA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGGTGTGCAAGCGCTACACAAAGTCAGTATGCAACATTATGATCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/1562962‑1563009 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcATATTAACGTCAGTAATAAGCAGATCATAATGTTGCATACTGACTTTGTGTAGCGCTTGCACACCATCAG  <  minE/1563028‑1562959                                                                                                                        ATGGTGTGCAAGCGCTACACAAAGTCAGTATGCAACATTATGATCTGCATATTAACGTCAGTAATAAGCAG                                                 <  1:2326621/71‑1    GTGTGCAAGCGCTACACAAAGTCAGTATGCAACATTATGATCTGCATATTAACGTCAGTAATAAGC                                                   >  1:607631/1‑66    GTGTGCAAGCGCTACACAAAGTCAGTATGCAACATTATGATCTGCATATTAACGTCAGTAATAAG                                                    >  1:172394/1‑65         CAAGCGCTACACAAAGTCAGTATGCAACATTATGATCTGCATATTAACGTCAGTAATAAGC                                                   <  1:2347453/61‑1                          CAGTATGCAACATTATGATCTGCATATTAACGTCAGTAAT                                                       >  1:616088/1‑40                                                CATATTAACGTCAGTAATAAGCAGATCATAATGTTGCATACTGACTTTGTGTAGCGCTTGCACACCATCAG  >  1:1855652/1‑71                                                                                                                        ATGGTGTGCAAGCGCTACACAAAGTCAGTATGCAACATTATGATCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  minE/1562962‑1563009 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcATATTAACGTCAGTAATAAGCAGATCATAATGTTGCATACTGACTTTGTGTAGCGCTTGCACACCATCAG  <  minE/1563028‑1562959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.