| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2685290 | 106 (2.260) | 5 (0.120) | 3/104 | 3.8 | 5.8% | coding (63/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | minE | = 2685307 | 70 (1.720) | coding (80/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACGGCTCTAAAGCATGAGGCGATTGCGCTTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCGTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2685214‑2685290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgtcaccAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCA < minE/2685307‑2685238 GACGGCTCTAAAGCATGAGGCGATTGCGCTTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTTCTCATC < 1:842/71‑1 ACGGCTCTAAAGCATGAGGCGATTGCGCTTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCG < 1:942077/71‑1 ACGGCTCTAAAGCATGAGGCGATTGCGCTTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCG < 1:715024/71‑1 TGAGGCGATTGCGCTTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCGT < 1:40061/58‑1 TGAGGCGATTGCGCTTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCGT < 1:1793254/58‑1 ATTGCGCTTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCGTC < 1:220524/52‑1 GCGCTTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCGTCACC > 1:1126362/1‑52 GCTTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCGTC < 1:1567344/47‑1 TTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCGTCACCAGGCTGGCGAACAGCAAGGTGAC > 1:970394/1‑71 TTCTAGCCACGAAGTTCATTTGCCCGTACGTTATTGCTAATCGTCACCAGGCTGGCGAACAGCAAGGTGA > 1:2001549/1‑70 TCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCGTCGTCACCAGGCTGGCGAACAGCAAGGTG > 1:1804711/1‑68 TCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCGTCGTCACCAGGCTGGCGAACAGCAAGGTG > 1:1128808/1‑68 CTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCGTCACCAGGCTGGCGAACAGCAAGGTGAC < 1:1180553/69‑1 GCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCG > 1:718012/1‑38 TCGTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAG < 1:482212/71‑1 GTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAA < 1:1693310/71‑1 GTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAA < 1:1576085/71‑1 GTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAA < 1:834683/71‑1 GTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAA < 1:612101/71‑1 GTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAG > 1:1177978/1‑69 TCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAG < 1:2329767/71‑1 CACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGC > 1:1919660/1‑71 CACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGA > 1:2122021/1‑68 CACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATG > 1:1091875/1‑53 CACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATG > 1:885551/1‑53 CACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATG > 1:561841/1‑53 ACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCG > 1:1271959/1‑71 ACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGC < 1:1819188/70‑1 CCAGGCTGGCGAACAGCAAGGTGACTATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCG > 1:362880/1‑70 CCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGC < 1:1598700/71‑1 CCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCG > 1:21758/1‑70 CAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCA < 1:1327365/71‑1 CAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCA < 1:104318/71‑1 CAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGC > 1:769419/1‑70 CAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAAC > 1:1856590/1‑53 GACGGCTCTAAAGCATGAGGCGATTGCGCTTCTCGCCACGAAGTTCATTTGCCCGTACGTTATTGCTCATCGTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2685214‑2685290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgtcaccAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCA < minE/2685307‑2685238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |