| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 689805 | 61 (0.860) | 5 (0.080) | 3/92 | NT | 7.9% | coding (968/1119 nt) | hyaA | hydrogenase 1, small subunit |
| ? | minE | = 689836 | 60 (0.920) | coding (999/1119 nt) | hyaA | hydrogenase 1, small subunit | |||||
AAATGGTTTCTGGGATCGCGGTTCGTTCTACAGCCGCGTGGTCGATATTCCGCAAATGGGTACTCATTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/689734‑689805‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacGCCAAGCGCGGTTAAACCGACGGTATCGGCGGTGGAATGAGTACCCATTTGCGGAATATCGACCACGCGG < minE/689836‑689767 AAATGGTTTCTTGGATCGCGGTTCGTTCTACAGCCGCGTGGTCGATATTCCGCAAATGGGTACTCATTCCA > 1:2188907/1‑71AAATGGTTTCTGGGATCGCGGTTCGTTCTACAGCCGCGTGGTCGATATTCCGCAAATGGGTACTCATTCCA < 1:691281/71‑1 AATGGTTTCTGGGATCGCGGTTCGTTCTACAGCCGCGTGGTCGATATTCCGCAAATGGGTACTCATTCCAC > 1:1113294/1‑71 TGGGATCGCGGTTCGTTCTACAGCCGCGTGGTCGATATTCCGCAAATGGGTACTCATTCC > 1:747285/1‑60 TACAGCCGCGTGGTCGATATTCCGCAAATGGGTACTCATTCCACGCCAAGCGCGGTTAAACCGACGGT < 1:3760980/68‑1 TACAGCCGCGTGGTCGATATTCCGCAAATGGGTACTCATTCCACGCCAAGCGCGGTTAAACCGACGG < 1:1508165/67‑1 CAGCCGCGTGGTCGATATTCCGCAAATGGGTACTCATTCCACGCCAAGCGCGGTTAAACCGACGGTAT > 1:1313613/1‑68 CAGCCGCGTGGTCGATATTCCGCAAATGGGTACTCATTCCACGCCAAGCGCGGTTAAACCGACGGTAT > 1:4443086/1‑68 GTCGATATTCCGCAAATGGGTACTCATTCCACGCCAAGCGCGGTTATACCGACGGT < 1:2003636/56‑1 CACGCCAAGCGCGGTTAAACCGACGGTATCGGCGGTGGAATGAGTACCCATTTGCGGAGTATCGACCACGC > 1:91075/1‑71 ACGCCAAGCGCGGTTAAACCGACGGTATCGGCGGTGGAATGAGTACCCATTTGCG > 1:3830844/1‑55 CGCCAAGCGCGGTTAAACCGACGGTATCGGCGGTGGAATGAGTACCCATTTGCGGAATATCGACCACGCGG > 1:375307/1‑71 CGCCAAGCGCGGTTAAACCGACGGTATCGGCGGTGGAATGAGTACCCATTTGCGGAATATCGACCACGCG > 1:1250857/1‑70 AAATGGTTTCTGGGATCGCGGTTCGTTCTACAGCCGCGTGGTCGATATTCCGCAAATGGGTACTCATTCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/689734‑689805‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacGCCAAGCGCGGTTAAACCGACGGTATCGGCGGTGGAATGAGTACCCATTTGCGGAATATCGACCACGCGG < minE/689836‑689767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |