New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? minE 981368 =59 (0.840)6 (0.100) 3/88 NT 9.8% coding (326/533 nt) ydfQ predicted lysozyme
?minE 981396 = 58 (0.930)coding (298/533 nt) ydfQ predicted lysozyme

GGCGCTGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCGTCATTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/981443‑981368
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtGGTTCGGTCAGTGGTACTTTAATATTGCGCTCCACCCATGCCAGCGCCTTATCACGCTCAATGGCGTTG  >  minE/981396‑981464
                                                                                                                                                 
GGCGCTGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCGTCAT                                                                            <  1:470050/71‑1
GGCGCTGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCGTCAT                                                                            <  1:2721206/71‑1
 GCGCTGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAATCGGGTATCGCGTCATT                                                                           <  1:1864683/71‑1
 GCGCTGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCGTCATT                                                                           <  1:821123/71‑1
   GCTGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCGTCATTTT                                                                         <  1:2116512/71‑1
   GCTGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCGTCATTTT                                                                         <  1:1998480/71‑1
     TGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCGTCATTTTGT                                                                       >  1:1862426/1‑71
     TGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCATCATTTTGT                                                                       >  1:2285195/1‑71
     TGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCATCATTTTGT                                                                       >  1:569221/1‑71
         ATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCGTCATT                                                                           >  1:108534/1‑63
                   CGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCGTCATTTT                                                                         <  1:2434323/55‑1
                                      TGACCGAACCACAAAAAGCGGGTATCGCGTCATTTTGT                                                                       <  1:2660660/38‑1
                                               CACAAAAAGCGGGTATCGCGTCATTTTGTGGTTCGGTCAGTGGT                                                        <  1:1548689/44‑1
                                               CACAAAAAGCGGGTATCGCGTCATTTTGTGGTTCGGTCAGTGGT                                                        <  1:3166754/44‑1
                                                    AAAGCGGGTATCGCGTCATTTTGTGGTTCGGTCAGTGGTACTTTAATATTG                                            <  1:207467/51‑1
                                                    AAAGCGGGTATCGCGTCATTTTGTGGTTCGGTCAGTGGTACTTTAATATTG                                            <  1:1433899/51‑1
                                                    AAAGCGGGTATCGCGTCATTTTGTGGTTCGGTCAGTGGTACTTTAATATTG                                            <  1:212801/51‑1
                                                      AGCGGGTATCGCGTCATTTTGTGGTTCGGTCAGTGGTACTTTAATATTGCG                                          >  1:1653904/1‑51
                                                                      TTTTGTGGTTCGGTCAGTGGTACTTTAATATTGCGCTCCACCCATGCCAGCGCCTTATCACGCTCAATGGC      >  1:1221627/1‑71
                                                                       TTTGTGGTTCGGTCAGTGGTACTTTAATATTGCGCTCCACCCATGCCAGCGCCTTATCACGCTCAA          >  1:3124124/1‑66
                                                                       TTTGTGGTTCGGTCAGTGGTACTTTAATATTGCGCTCCACCCATGCCAGCGCCTTATCACGCTCAA          >  1:4091873/1‑66
                                                                       TTTGTGGTTCGGTCAGTGGTACTTTAATATTGCGCTCCACCCATGCCAGCGCCTTATCACGCTCAA          >  1:1847191/1‑66
                                                                       TTTGTGGTTCGGTCAGTGGTACTTTAATATTGCGCTCCACCCATGCCAGCGCCTTATCACGCTCAA          >  1:1971314/1‑66
                                                                         TGTGGTTCGGTCAGTGGTACTTTAATATTGCGCTCCACCCATGCCAGCGCCTTATCACGCTCAATGGCGTT   >  1:662953/1‑71
                                                                           TGGTTCGGTCAGTTGTACTTTAATATTGCGCTCCACCCATGCCAGCGCCTTATCACGCTCAATGGCGTTG  <  1:2861843/70‑1
                                                                           TGGTTCGGTCAGTGGTACTTTAATATTGCGCTCCACCCATGCCAGCGCCTTATCACGCTCAATGGCGTTG  <  1:2840875/70‑1
                                                                                                                                                 
GGCGCTGGCATGGGTGGAGCGCAATATTAAAGTACCACTGACCGAACCACAAAAAGCGGGTATCGCGTCATTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/981443‑981368
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtGGTTCGGTCAGTGGTACTTTAATATTGCGCTCCACCCATGCCAGCGCCTTATCACGCTCAATGGCGTTG  >  minE/981396‑981464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.