| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,826,741 | G→A | 7.7% | intergenic (‑418/‑17) | hydN ← / → mutS | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/methyl‑directed mismatch repair protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,826,741 | 0 | G | A | 7.7% | 210.1 / 6.5 | 65 | intergenic (‑418/‑17) | hydN/mutS | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/methyl‑directed mismatch repair protein |
| Reads supporting (aligned to +/- strand): ref base G (28/32); new base A (3/2); total (31/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.63e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 | |||||||||||
GTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTATCT > minE/1826676‑1826810 | gTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCg < 1:2078746/71‑1 (MQ=255) aTCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGa > 1:1737176/1‑71 (MQ=255) aTGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAAc < 1:885333/64‑1 (MQ=255) tgCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAAc > 1:1231343/1‑71 (MQ=255) cgcCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCC < 1:1067002‑M1/71‑1 (MQ=255) cgcCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCC < 1:541502‑M1/71‑1 (MQ=255) tATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCAt > 1:2942566/1‑69 (MQ=255) aTGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACa > 1:2801639/1‑59 (MQ=255) aTGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCAt > 1:3684944/1‑68 (MQ=255) aTGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATg < 1:3374537/69‑1 (MQ=255) tgATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGc < 1:3452205/71‑1 (MQ=255) aTTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGAc > 1:534606/1‑53 (MQ=255) aTTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACa > 1:3936130/1‑54 (MQ=255) aTTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAg > 1:2143039/1‑66 (MQ=255) aTTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCaa < 1:3606552/71‑1 (MQ=255) ttACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGaa < 1:443471/46‑1 (MQ=255) aCAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACTGGACATAACCCCATGAGTGCaa < 1:1660161/68‑1 (MQ=255) aCAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACTGGACATAACCCCATGAGTGCaa < 1:1655035/68‑1 (MQ=255) aCAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCaa < 1:3615200/68‑1 (MQ=255) aCAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCaa > 1:2055167/1‑68 (MQ=255) aCAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCaa > 1:2796847/1‑68 (MQ=255) cAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCaa < 1:3197353/67‑1 (MQ=255) gAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGa > 1:4438604/1‑44 (MQ=255) gAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGa > 1:492451/1‑44 (MQ=255) gAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCa < 1:1663378/62‑1 (MQ=255) gAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCa < 1:3501629/62‑1 (MQ=255) aaaaTAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAAtt < 1:629496/71‑1 (MQ=255) aaTAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTc < 1:3491459/71‑1 (MQ=255) aaTAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTc < 1:1287793/71‑1 (MQ=255) aaTAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTc < 1:1214309/71‑1 (MQ=255) aTAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCg < 1:4114011/71‑1 (MQ=255) tAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGaa < 1:1567152/63‑1 (MQ=255) tAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGa > 1:1345026/1‑71 (MQ=255) aaaaCCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGacg > 1:796259/1‑71 (MQ=255) aaaaCCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGacg < 1:2704351/71‑1 (MQ=255) aaCCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGacgc > 1:1185847/1‑70 (MQ=255) aCCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGacgcc > 1:416315/1‑70 (MQ=255) cATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGaa < 1:2990908/56‑1 (MQ=255) cATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGacgccca < 1:3479406/70‑1 (MQ=255) tCACACCCCATTTAATATCAGGGAACCGGACATAACCC < 1:1220617‑M1/38‑1 (MQ=255) tCACACCCCATTTAATATCAGGGAACCGGACATAACCC < 1:2395566‑M1/38‑1 (MQ=255) tCACACCCCATTTAATATCAGGGAACCGGACATAACCC < 1:249151‑M1/38‑1 (MQ=255) acacCCCATTTAATATCAGGGAAACGGACATAACCCCATGAGTGCAATAGaa > 1:2693011/1‑52 (MQ=255) taattTAATATCAGTAAACCGGACATAACCCatgaagaaaaatcgcgcttttttgaag > 1:1442103‑M1/3‑31 (MQ=255) taattTAATATCAGTAAACCGGACATAACCCatgaagaaaaatcgcgctttt < 1:2518779‑M1/50‑22 (MQ=255) cATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCatga > 1:588066/1‑71 (MQ=255) cATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCatga > 1:1407137/1‑71 (MQ=255) aTTTAATATCAGTAAACCGGACATAACCCatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag > 1:646539‑M1/1‑29 (MQ=255) aTTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCatgat > 1:3719914/1‑71 (MQ=255) tttAATATCAGTAAACCGGACATAACCCatgaagaaaaatcgcgcttttttgaagtggg < 1:1083581‑M1/59‑32 (MQ=255) ttAATATCAGTAAACCGGACATAACCCatgaagaaaaatcgcgcttttttgaagtgggcagggggcaagta > 1:968414‑M1/1‑27 (MQ=255) ttAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGa > 1:675173/1‑51 (MQ=255) tAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGacgccca > 1:2866164/1‑56 (MQ=255) tAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCatgatg > 1:534663/1‑69 (MQ=255) tAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCatgatg > 1:2517073/1‑69 (MQ=255) aaTATCAGGGAACCGGACATAACCCCATGAGTGCaa > 1:1784008/1‑36 (MQ=255) atatCAGGGCACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATgca < 1:2634792/69‑1 (MQ=255) tCAGGGAACCGGCCATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGcagcag < 1:4164600/70‑1 (MQ=255) tCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTc < 1:3558507/43‑1 (MQ=255) tCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTc < 1:329972/43‑1 (MQ=255) tCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCatga > 1:2720519/1‑62 (MQ=255) aGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTc < 1:763525/41‑1 (MQ=255) aGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTc < 1:216454/41‑1 (MQ=255) aGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTa > 1:3780696/1‑70 (MQ=255) aGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTAt > 1:1059520/1‑71 (MQ=255) gggAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATgcagc < 1:2586920/65‑1 (MQ=255) ggAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGa > 1:1788379/1‑41 (MQ=255) ggAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGa > 1:506071/1‑41 (MQ=255) ggAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTAtct < 1:2471574/71‑1 (MQ=255) gAACCGGACATAACCCCATGAGTGCAATATAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTAtct > 1:2905408/1‑70 (MQ=255) gAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTAtc > 1:627229/1‑69 (MQ=255) | GTATCATGTGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCATGAGTGCAATAGAAAATTTCGACGCCCATACGCCCATGATGCAGCAGTATCT > minE/1826676‑1826810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |