| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,726,583 | C→G | 7.0% | R167P (CGT→CCT) | yheS ← | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,726,583 | 0 | C | G | 7.0% | 228.6 / 5.7 | 71 | R167P (CGT→CCT) | yheS | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base C (33/33); new base G (3/2); total (36/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.35e-01 | |||||||||||
TTTCCAGCCAGATAACGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAATCACTTACCGGGCGCTC > minE/2726515‑2726653 | tttCCAGCCAGATAACGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACgg > 1:1953250/1‑71 (MQ=255)tttCCAGCCAGATAACGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACgg > 1:4025726/1‑71 (MQ=255)tttCCAGCCAGATAACGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACgg > 1:1165499/1‑71 (MQ=255)tttCCAGCCAGATAACGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACgg > 1:2155117/1‑71 (MQ=255) ccagATAACGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCa < 1:1410610/71‑1 (MQ=255) ccgATACCGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCa < 1:1457253/68‑1 (MQ=255) cataTAACGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAg > 1:1769894/4‑71 (MQ=255) cagATAACGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAg > 1:707835/1‑71 (MQ=255) aaCGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCt > 1:4290818/1‑71 (MQ=255) aCGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTg > 1:3580068/1‑71 (MQ=255) ggCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTggg > 1:1460593/1‑71 (MQ=255) gCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTggg > 1:3071159/1‑70 (MQ=255) gCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGc < 1:1431423/71‑1 (MQ=255) gCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGc < 1:762173/71‑1 (MQ=255) gCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGc < 1:3104206/71‑1 (MQ=255) gagatcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCaa < 1:1391996/68‑1 (MQ=255) gagatcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCaa < 1:577013/68‑1 (MQ=255) gagatcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCaa < 1:2919074/68‑1 (MQ=255) gagatcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGt < 1:3586244/71‑1 (MQ=255) agatcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGtt < 1:915776/71‑1 (MQ=255) agatcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGt > 1:777171/1‑70 (MQ=255) agatcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGt > 1:2544637/1‑70 (MQ=255) atcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACg < 1:2719427/45‑1 (MQ=255) atcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTaa < 1:592740/71‑1 (MQ=255) atcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTaa < 1:1432369/71‑1 (MQ=255) tcgagGTGGTTGGTCGGTTCGTCGAGCAACAGCAGGTCGGACGGGCACATCAGCGCCTGCGCCAGGtt > 1:698128/1‑68 (MQ=12) tcgagGTGGTTGGTCGGTTCGTCGAGCAACAGCAGGTCGGACGGGCACATCAGCGCCTGCGCCAGGtt > 1:891876/1‑68 (MQ=12) tcgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAg < 1:2313079/71‑1 (MQ=255) cgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGc > 1:3591240/1‑45 (MQ=255) cgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGc > 1:3517874/1‑45 (MQ=255) cgagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGc > 1:1042042/1‑45 (MQ=255) gagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGa < 1:3818389/70‑1 (MQ=255) gagGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGa > 1:2821488/1‑70 (MQ=255) gtggtTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCa > 1:3172757/1‑71 (MQ=255) gtggtTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCa < 1:3978063/71‑1 (MQ=255) gtggtTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCa < 1:2489140/71‑1 (MQ=255) ggtTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATa > 1:1879184/1‑71 (MQ=255) gtTGGTCGGTTCGTCGAGCAGCAGCAGGTCGGAAGGGCACATCAGCGCCTGCGCCAGGTTCAGGCg < 1:3835698/66‑1 (MQ=12) gtTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATAc < 1:3482446/71‑1 (MQ=255) aGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGa > 1:658986/1‑61 (MQ=255) aGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGa > 1:2321576/1‑61 (MQ=255) aGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGc > 1:4308151/1‑70 (MQ=255) cgtcgAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTaa > 1:2524353/1‑51 (MQ=255) tcgAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCgg > 1:1448014/1‑70 (MQ=255) gAGCAGCAGCAGGTCGGAAGGGCACATCAGCGCCTGCGCCAGGTTCAGGCGCATGCGCCAGCCGCCCGag > 1:1745326/1‑69 (MQ=255) gAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCa < 1:53758/53‑1 (MQ=255) agcagcagcAGGTCGGAAGGGCACATCAGCGCCTGCGCCAGGTTCAGGCGCATGCGCCAGCCGCCCGagaa < 1:2994622/71‑1 (MQ=255) cagcagcaAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAAt < 1:3866905/71‑1 (MQ=255) agcagcaAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAATc < 1:457950/71‑1 (MQ=255) agcagcaAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAATc < 1:2414877/71‑1 (MQ=255) agcaAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAATCACt < 1:3975827/71‑1 (MQ=255) agcaAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAATCACt < 1:1470357/71‑1 (MQ=255) agcaAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAATCACt < 1:1044827/71‑1 (MQ=255) gcaAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAATCACtt < 1:1021921/71‑1 (MQ=255) aGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAATCACTTAcc < 1:2741484/71‑1 (MQ=255) gTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCgg < 1:3578605/56‑1 (MQ=255) tCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACg < 1:1957139/38‑1 (MQ=255) tCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACg < 1:2686455/38‑1 (MQ=255) cTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCa < 1:3165588/39‑1 (MQ=255) cTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCa < 1:679759/39‑1 (MQ=255) cTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCa < 1:3807066/39‑1 (MQ=255) cTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATa > 1:4431460/1‑41 (MQ=255) cTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATa > 1:1769781/1‑41 (MQ=255) tGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCa > 1:2938612/1‑38 (MQ=255) aCGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATa > 1:3510947/1‑37 (MQ=255) aCGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATa > 1:1746519/1‑37 (MQ=255) aCGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATa > 1:2622069/1‑37 (MQ=255) aCGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATa > 1:679216/1‑37 (MQ=255) aCGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATa > 1:3044434/1‑37 (MQ=255) aCGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATa > 1:1850160/1‑37 (MQ=255) aCGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATa > 1:1168636/1‑37 (MQ=255) cGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAATCACTTACCGGGCGCTc < 1:2746179/71‑1 (MQ=255) | TTTCCAGCCAGATAACGGCATCGAGATCGAGGTGGTTAGTCGGTTCGTCGAGCAGCAGCAAGTCTGAACGGCAAATCAGCGCCTGGGCAAGGTTAAGACGCATACGCCAGCCCCCGGAAAAATCACTTACCGGGCGCTC > minE/2726515‑2726653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |