| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1994733 = | 75 (0.710) | 9 (0.090) | 3/88 | NT | 12.6% | coding (1417/2136 nt) | speC | ornithine decarboxylase, constitutive |
| ? | minE | 1994757 = | 58 (0.610) | coding (1393/2136 nt) | speC | ornithine decarboxylase, constitutive | |||||
TTATCCGACATCAGTGTTAGCCAGCGACCGCCGTTTTTTCAGTTTTGAGCCGGGGGCGAAGTGGCACGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1994803‑1994733‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATC > minE/1994757‑1994823 TTATCCGACATCAGTGTTAGCCAGCGACCGCCGTTTTTTCAGTTTTGAGCCGGGGGCGAAGTGGCACGGCT < 1:389851/71‑1 TGAGCCGGGGGCGAAGTGGCACGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGG > 1:3346355/1‑69 TGAGCCGGGGGCGAAGTGGCACGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAA > 1:4849096/1‑57 GGGGCGAAGTGGCACGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATG < 1:1156863/58‑1 GGGGCGAAGTGGCACGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATG < 1:831232/58‑1 GGGGCGAAGTGGCACGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATG < 1:6556367/58‑1 GGGGCGAAGTGGCACGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATG < 1:551786/58‑1 GGGGCGAAGTGGCACGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATG < 1:34829/58‑1 GGGGCGAAGTGGCACGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATG < 1:3377519/58‑1 AAGTGGCACGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAA < 1:25935/71‑1 CGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTACCACTGATGTCGGATAATCCTGCCACAATTTGCCAT > 1:3844546/1‑71 CGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCAT > 1:5763961/1‑71 GGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGAT > 1:2529461/1‑42 GCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATC < 1:5347366/70‑1 GCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATC < 1:1939673/70‑1 GCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATC < 1:6583473/70‑1 GCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATC < 1:1117635/70‑1 TTATCCGACATCAGTGTTAGCCAGCGACCGCCGTTTTTTCAGTTTTGAGCCGGGGGCGAAGTGGCACGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1994803‑1994733‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATC > minE/1994757‑1994823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |