| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 436833 | 114 (1.070) | 150 (1.410) | 39/98 | NT | 57.1% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | minE | 1803907 = | 111 (1.040) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 347 total aligned reads displayed.
TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > minE/436763‑436903 | tGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa < 1:1608235/71‑1 (MQ=255) aTCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaa < 1:2923316/70‑1 (MQ=255) aTCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcg < 1:1210392‑M1/71‑3 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGt > 1:2475397/1‑71 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:1783699‑M1/71‑8 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:6873299‑M1/71‑8 (MQ=255) cacaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaa < 1:2441916‑M1/71‑9 (MQ=255) cacaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaa < 1:1952967‑M1/71‑9 (MQ=255) cacaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaa < 1:5659675‑M1/71‑9 (MQ=255) catcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg > 1:38228/1‑68 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaat > 1:4300054‑M1/1‑60 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaat > 1:277142‑M1/1‑60 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAga < 1:2541720/71‑1 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:31865‑M1/70‑12 (MQ=255) gTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggac < 1:1153356/71‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaa < 1:2068676/52‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaa < 1:3369276/52‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:4270067‑M1/58‑8 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:1531355‑M1/58‑8 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:2809970/71‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:3996453/71‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:1439520/71‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:4324166/71‑1 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcat < 1:5513165‑M1/71‑23 (MQ=255) aTGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa < 1:6539902/48‑1 (MQ=255) aTGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca < 1:5470543‑M1/69‑22 (MQ=255) aTGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag > 1:6787111/1‑71 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:4371983‑M1/1‑47 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:3072361‑M1/71‑28 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:1908918‑M1/71‑28 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:665313‑M1/1‑42 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTG‑GGAACTATCTAAcggctgaaattaatgaggtca > 1:6368197‑M1/1‑41 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg > 1:5954082/1‑70 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg > 1:1468127‑M1/1‑40 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg > 1:315083‑M1/1‑40 (MQ=255) cccAGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCa > 1:4890291/1‑49 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg > 1:5622539‑M1/1‑39 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatta > 1:6599374‑M1/1‑39 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:5010537‑M1/46‑8 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:707751‑M1/52‑16 (MQ=255) cggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatag > 1:5418638‑M1/1‑35 (MQ=255) cggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCa > 1:5519141/1‑44 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac > 1:3218484‑M1/1‑31 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAAt < 1:2108402/71‑1 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:6213441‑M1/41‑12 (MQ=255) ttgattgaCAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt < 1:3764231‑M1/71‑42 (MQ=255) gattgaGAAGGTTTGCGGATCTATCTAAcggctgaaattaatgaggtca > 1:5877365‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:835807‑M1/70‑43 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:174484‑M1/70‑43 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:2666402‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:3923721‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:420187‑M1/1‑28 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt < 1:5125861/70‑1 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt < 1:4264713/70‑1 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt < 1:4705076/70‑1 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt < 1:3270764/70‑1 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:4537951‑M1/1‑26 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:4605317‑M1/1‑26 (MQ=255) gagaAGGTTTGCGGAACTATCTAAcggctgaaattaat < 1:2721564‑M1/38‑15 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa < 1:5788065/70‑1 (MQ=255) agaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAgg > 1:6277519/1‑71 (MQ=255) gaAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:6726692‑M1/37‑16 (MQ=255) aaGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:6325289‑M1/1‑21 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggat > 1:4112832‑M1/1‑20 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:605442‑M1/1‑20 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:1557246‑M1/1‑20 (MQ=255) gTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg < 1:6421128/62‑1 (MQ=255) gTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg < 1:5217532/62‑1 (MQ=255) tttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa < 1:644977/56‑1 (MQ=255) tttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAAcc > 1:2952999/1‑71 (MQ=255) ttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaa > 1:1662149‑M1/1‑16 (MQ=255) ttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:1303993‑M1/1‑16 (MQ=255) ttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:5250807‑M1/1‑16 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCt > 1:1103687/1‑71 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCt > 1:3892716/1‑71 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa > 1:5702187/1‑61 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAg > 1:3465670/1‑62 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATCGCAATCCACAATCGTGCa > 1:5195301/1‑61 (MQ=255) gCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaac < 1:6187661‑M1/70‑57 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaa < 1:4482183‑M1/71‑59 (MQ=255) ggAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTg < 1:3601811/68‑1 (MQ=255) gAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:3428619‑M1/44‑34 (MQ=255) gAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:4635920‑M1/44‑34 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCa > 1:1804399/1‑36 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAAt < 1:240994/51‑1 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac > 1:2333352/1‑70 (MQ=255) aaCTATCTAAAAGGTTGCAGACAAATGACAAAGCAATGGCAATc < 1:478492/44‑1 (MQ=255) aTCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgcta > 1:5315004‑M1/1‑6 (MQ=255) aTCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgcta > 1:4976824‑M1/1‑6 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaaca > 1:5886667/1‑69 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaa < 1:1491010‑M1/70‑66 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac < 1:2846769/64‑1 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac < 1:487802/64‑1 (MQ=255) cTAAcggctgaaattaatgaggtcatacccaaatgga > 1:1037694‑M1/1‑4 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaat > 1:1404566‑M1/1‑3 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAg < 1:2257650/50‑1 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:4414696/1‑64 (MQ=255) aacggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt > 1:1566399‑M1/1‑2 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa > 1:1762623/1‑47 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGtgat > 1:3519680/1‑71 (MQ=255) | TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > minE/436763‑436903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |